New Projects

We have a number of projects we want to continue to develop and a number of exciting new projects we want to get off the ground.

We are writing code to extend the Python based image viewer called Napari. This includes writing plugins to manage our image analysis pipelines to (i) load, (ii) analyze, (iii) visualize, and (iv) save.

To begin making a Napari plugin, check out this documentation.

Each of these projects will follow our development workflow by first create a general purpose backend Python engine (that can be used by others) and then writing interface code to (in this case) visualize our data and analysis in Napari.

Some Example Projects

1. Load and analyze Ca⁺⁺ imaging movies using CaImAn.

2. Load and analyze Super resolution microscopy images using AICS-Segmenter. Good news! The folks at the Allen Institute for Cell Science (AICS) have recently created a Napari plugin for the AICS Segmenter Python engine.

3. Load and analyze Kymograph images (see Sparks).

4. Load and visualize existing MapManager analysis.